Candyce Martin 1999 Irrevocable Trust v. United States , 739 F.3d 1204 ( 2014 )


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  •                      FOR PUBLICATION
    UNITED STATES COURT OF APPEALS
    FOR THE NINTH CIRCUIT
    CANDYCE MARTIN 1999                             No. 11-17879
    IRREVOCABLE TRUST, a Partner
    other than the Tax Matters                       D.C. Nos.
    Partner; CONSTANCE GOODYEAR                  4:08-cv-05150-PJH
    1997 IRREVOCABLE TRUST, a                    4:08-cv-05151-PJH
    Partner other than the Tax Matters
    Partner,
    Petitioners-Appellants,               OPINION
    v.
    UNITED STATES OF AMERICA,
    Respondent-Appellee.
    Appeal from the United States District Court
    for the Northern District of California
    Phyllis J. Hamilton, District Judge, Presiding
    Argued and Submitted
    October 16, 2013—San Francisco, California
    Filed January 13, 2014
    Before: Sidney R. Thomas and M. Margaret McKeown,
    Circuit Judges, and Mark W. Bennett, District Judge.*
    Opinion by Judge Thomas
    *
    The Honorable Mark W. Bennett, District Judge for the U.S. District
    Court for the Northern District of Iowa, sitting by designation.
    2   MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES
    SUMMARY**
    Tax
    The panel affirmed in part and reversed in part the district
    court’s denial of a petition for readjustment of partnership
    items, brought by a group of heirs of the founders of
    Chronicle Publishing Company in connection with its sale
    and resulting tax consequences.
    The heirs owned a portion of the company, either outright
    or through family trusts. They formed a tiered partnership
    structure and commenced a series of transactions designed to
    minimize their tax liability from the company’s sale. In
    connection with an IRS audit of tax returns for two
    partnerships involved in the transactions, the IRS executed
    agreements extending the limitations period for assessing
    taxes. The IRS then issued a Notice of Final Partnership
    Administrative Adjustment (FPAA) that effectively increased
    the heirs’ tax liability. The heirs, via two trusts that were
    partners in the partnerships, challenged the FPAA as time-
    barred.
    After reviewing partnership taxation law and the language
    of the extension agreements, the panel concluded that some
    of the adjustments made in the FPAA were directly due to,
    caused by, or generated by partnership items that flow
    through to the partners (appellants), and that the extension
    agreements therefore encompassed some of the adjustments
    **
    This summary constitutes no part of the opinion of the court. It has
    been prepared by court staff for the convenience of the reader.
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES          3
    made by the FPAA and permitted the IRS to assess new tax
    on appellants today.
    COUNSEL
    Michael J. Desmond (argued), Law Offices of Michael J.
    Desmond, APC, Santa Barbara, California; Ronald L. Buch,
    Jr. and Saul Mezei, Bingham McCutchen LLP, Washington,
    D.C., for Petitioners-Appellants.
    Arthur T. Catterall (argued), Attorney, Kathryn Keneally,
    Assistant Attorney General, Tamara W. Ashford, Deputy
    Assistant Attorney General, Gilbert S. Rothenberg, and
    Jonathan S. Cohen, Attorneys, United States Department of
    Justice, Tax Division, Washington, D.C.; Melinda L. Haag,
    United States Attorney, and Tom Moore, Assistant United
    States Attorney, United States Attorneys’ Office for the
    Northern District of California, San Francisco, California, for
    Respondent-Appellee.
    OPINION
    THOMAS, Circuit Judge:
    In this appeal, we examine some of the tax consequences
    arising from the sale of the Chronicle Publishing Company
    and, specifically, whether the Internal Revenue Service’s
    proposed adjustment of certain partnership tax items was time
    barred.      Although the ultimate issue is relatively
    straightforward, both the back story and the legal framework
    are somewhat complex, requiring us to delve deep in the heart
    of taxes.
    4        MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES
    I
    The storied Chronicle Publishing Company was founded
    in the mid-1800s in San Francisco by teenage brothers
    Charles and M. H. de Young with a borrowed $20 gold piece.
    Their first venture, the Daily Dramatic Chronicle, began with
    a small circulation, but its readership quickly tripled when it
    provided the only breaking news accounts of the assassination
    of Abraham Lincoln. It was rechristened as the Morning
    Chronicle and ultimately the San Francisco Chronicle.
    Within a few decades, it became the largest circulation
    newspaper on the West Coast.1
    After the death of Charles de Young in 1880, M. H. de
    Young assumed control of the paper, incorporated it as the
    Chronicle Publishing Company (“Chronicle Publishing”) in
    1906, and ran the enterprise until his death in 1925. He left
    the newspaper assets in an irrevocable trust that would
    terminate on the death of all five of his children. From M. H.
    de Young’s death until the early 1990s, a family member
    remained at the helm of the media empire. Over the course
    of time, Chronicle Publishing expanded its operations,
    acquiring a television station along with other properties and
    forming a book publishing company.
    The Chronicle was not the only media game in town.
    Mining entrepreneur George Hearst acquired the rival San
    Francisco Examiner in 1880 and turned its management over
    to his son William Randolph Hearst seven years later, when
    the elder Hearst became a United States Senator. Over the
    next century, the Examiner and Chronicle engaged in a fierce
    1
    See generally John P. Young, Journalism in California 68–71 (1915).
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES                5
    competition for readers.2 With both papers experiencing
    financial challenges in the early 1960s, the Examiner and the
    Chronicle entered into a joint operating and profit sharing
    agreement in 1965. The joint operating agreement also
    granted Hearst the right of first refusal if Chronicle
    Publishing were put up for sale. Reilly v. Hearst Corp.,
    
    107 F. Supp. 2d 1192
    –99 (N.D.Cal. 2000).
    When M. H. de Young’s last child died in 1988 and the
    irrevocable trust dissolved, Chronicle Publishing elected to be
    treated as a Delaware Subchapter S corporation. Companies
    generally take such actions to avoid the double taxation
    attendant to “C” corporations, where taxes are assessed on
    both corporations and shareholders. The Subchapter S
    corporate structure is often employed by small, family-held
    businesses. However, to discourage misuse of the Subchapter
    S vehicle, Congress provided that Subchapter S corporations
    would be subject to the normal double taxation if the
    corporation were sold within ten years of its creation. Estate
    of Litchfield v. Comm’r, 
    97 T.C.M. 1079
    , at *2 (T.C.
    2009) (citing 26 U.S.C. § 1374).
    In the late 1990s, amidst deteriorating family
    relationships and financial challenges, and after the ten-year
    Subchapter S waiting period expired, the de Young heirs
    decided to sell most of the assets of Chronicle Publishing to
    the rival Hearst Corporation and distribute the assets among
    the heirs according to their ownership percentages. The
    Chronicle was to continue as a morning paper, and the
    Examiner was sold to a third party.
    2
    See generally David Nasaw, The Chief: The Life of William Randolph
    Hearst 59–80 (2006).
    6       MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES
    In its discussions of the sale, Chronicle Publishing’s
    Board of Directors realized the possibility of future liability
    arising from a variety of potential issues, such as
    environmental problems, contractual disputes, and the risk
    that Chronicle Publishing might lose its Subchapter S status.
    Thus, the Directors prepared a recontribution agreement,
    which provided that the shareholders would contribute on a
    pro rata basis if there were future Chronicle Publishing
    liabilities. Each shareholder was required to execute the
    recontribution agreement as a condition of receiving a
    distribution of proceeds from the Chronicle Publishing sale.
    Our case involves one group of de Young heirs,
    specifically Conseulo Martin (M. H. de Young’s
    granddaughter) and her five children (“the Martin heirs”).
    The Martin heirs owned 16.67% of the shares of Chronicle
    Publishing, either outright or through fourteen family trusts
    (“the Martin Family Trusts” or “trusts”). Some of the trusts
    had existed since the 1980s; others were created just before
    the Chronicle Publishing sale.
    The Martin heirs sought advice on how to minimize the
    tax consequences of the proposed Chronicle Publishing sale
    and to protect themselves against future liabilities posed by
    the recontribution agreement. After consulting with several
    tax specialists, the Martin heirs decided to implement what
    the IRS now claims was a “Son of BOSS” tax shelter.3
    Although there are a number of variants, a “Son of BOSS”
    tax scheme generally involves a “series of contrived steps in
    a partnership interest to generate artificial tax losses designed
    3
    “BOSS” is an acronym for “Bond and Option Sales Strategy.”
    Kornman & Assocs., Inc. v. United States, 
    527 F.3d 443
    , 446 n. 2 (5th Cir.
    2008). “Son of BOSS” is a variation of the “BOSS” tax shelter. 
    Id. MARTIN 1999
    IRREVOCABLE TRUST V. U NITED STATES             7
    to offset income from other transactions.” Nevada Partners
    Fund, L.L.C. ex rel. Sapphire II, Inc. v. U.S. ex rel. I.R.S.,
    
    720 F.3d 594
    , 604 (5th Cir. 2013). Assets encumbered by
    artificial liabilities are transferred into a partnership with the
    goal of increasing basis in the partnership. The net result is
    that the artificial loss offsets the taxable gain.
    Thus, acting on tax advice, the Martin Family Trusts
    formed a tiered partnership structure, meaning that the trusts
    served as partners of an upper tier of partnerships that owned
    interests in a lower tier partnership, and then engaged in a
    short term hedging strategy using option contracts. There
    were three parts to the structure: (a) the fourteen Martin
    Family Trusts; (b) an upper partnership tier, which included
    multiple partnerships; and (c) a single, lower tier partnership.
    At the top of the structure were the fourteen Martin Family
    Trusts, which were the ultimate partners of the two tiers of
    partnerships below.
    The upper partnership tier consisted of three partnerships,
    the most relevant of which is First Ship, LLC (“First Ship”).
    The fourteen Martin Family Trusts were the First Ship
    partners and 100% owners. After the Chronicle Publishing
    sale, the trusts contributed certain of the sale assets to First
    Ship. The other two upper-tier partnerships (the “minority
    partnerships”), were Fourth Ship, LLC (“Fourth Ship”) and
    LMGA Holdings, Inc. (“LMGA”).
    The lower tier consisted solely of First Ship 2000-A, LLC
    (“2000-A”). First Ship, Fourth Ship, and LMGA were the
    three partners of 2000-A. First Ship owned 77.03% of 2000-
    A, with Fourth Ship and LMGA owning minority partnership
    shares.
    8   MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES
    With the structure in place, the Martin heirs commenced
    a series of transactions designed to create losses that would
    offset the taxable gain realized from the Chronicle Publishing
    sale. The trusts purchased certain assets, in addition to the
    stock they already owned, and transferred some assets to the
    partnerships. Most relevant to this case, the trusts purchased
    $315.7 million in European-style option contracts (“the long
    options”), while simultaneously selling $314.8 million in
    similar-style option contracts (“the short options”). The trusts
    paid JP Morgan the difference between the two sets of
    options, roughly $900,000. The trusts then contributed their
    assets to the upper-tier partnerships, mostly to First Ship.
    First Ship received over $485 million in assets from the
    trusts, including the value of the purchased long options. In
    contrast, Fourth Ship only received $29.4 million in assets.
    First Ship then contributed $415 million in assets to 2000-A,
    including the value of the purchased long options. Fourth
    Ship and LMGA also transferred some of their more limited
    assets to 2000-A.
    Throughout the transactions, the various entities did not
    treat the short options as a liability or subtract the amount
    owed on the short options from the amount purchased in long
    options. As a result, the Martin Family Trusts and First Ship
    each saw a dramatic increase in their tax bases in the
    partnerships below them (i.e., the Martin Family Trusts in
    relation to First Ship and First Ship in relation to 2000-A).
    Following the contribution, 2000-A sold off its assets,
    terminated the options, distributed its remaining holdings
    back to its partners, primarily First Ship, and dissolved.
    2000-A filed its Form 1065 partnership tax return on
    March 22, 2001. First Ship in turn reported its share of gains
    and losses from the closing out of 2000-A, including a $321
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES          9
    million short-term capital loss, in a March 22, 2001 Form
    1065 return. Fourth Ship and LMGA also filed returns and
    posted small losses due to the liquidation of 2000-A. First
    Ship’s partners, the Martin Family Trusts, timely filed their
    own returns before April 15, 2001. Due to the inflated basis
    the Martin Family Trusts had in First Ship, the trusts reported
    losses of over $320 million following the termination of the
    options and the dissolution of 2000-A.
    The net result of these transactions was that the Martin
    heirs did not owe any taxes on the proceeds from the
    Chronicle Publishing sale. Perhaps not unexpectedly, this
    fortuity drew the attention of the IRS. In 2004, the IRS began
    an audit of the year 2000 tax returns for First Ship and 2000-
    A and First Ship’s 2001 tax return.
    Both 2000-A and First Ship are subject to the uniform
    audit rules of the Tax Equity and Fiscal Responsibility Act
    (“TEFRA”). See 26 U.S.C. (“I.R.C.”) §§ 6221–6233.
    Because the three-year statute of limitations found in I.R.C.
    § 6229 and § 6501 was near, the IRS executed Form 872-I
    Extension Agreements (“extension agreements”) with the
    Martin Family Trusts. The following restrictive language
    was added to each of the agreements:
    The amount of any deficiency assessment is to
    be limited to that resulting from any
    adjustment directly or indirectly (through one
    or more intermediate entities) attributable to
    partnership flow-through items of First Ship
    LLC, and/or to any adjustment attributable to
    costs incurred with respect to any transaction
    engaged in by First Ship LLC, any penalties
    and additions to tax attributable to any such
    10 MARTIN 1999 IRREVOCABLE TRUST V. UNITED STATES
    adjustments, any affected items, and any
    consequential changes to other items based on
    any such adjustments.
    Because the first set of agreements only extended the
    limitations period until April 15, 2005, the IRS further
    extended the period through successive agreements,
    eventually extending the period until June 30, 2008.
    On June 19, 2008, the IRS issued a Notice of Final
    Partnership Administrative Adjustment (“FPAA”) to 2000-A
    for the 2000 tax year. It did not issue an FPAA for First Ship
    for the 2000 tax year. On the same date, the IRS issued an
    FPAA for First Ship for the 2001 tax year. There is no
    challenge to the 2001 FPAA to First Ship, so the only FPAA
    at issue in this case is the FPAA to 2000-A for the 2000 tax
    year (“2000-A FPAA”). The FPAA disregarded all of 2000-
    A’s transactions, labeling the partnership a sham and finding
    it “lacked economic substance.” Most relevant here, the
    FPAA declared that the short options constituted liabilities
    and expressly reduced First Ship’s basis in 2000-A by
    $314,885,516. This had the effect of eliminating most of the
    $321 million short-term capital loss reported by First Ship on
    its 2000 tax return.
    Two of the trusts, the Candyce Martin 1999 Irrevocable
    Trust and the Constance Goodyear 1997 Irrevocable Trust
    (“taxpayers”), challenged the FPAAs by filing petitions
    against the United States. Taxpayers filed for partial
    summary judgment, challenging the FPAA to 2000-A.
    Taxpayers argued the 2000-A FPAA was time-barred by the
    restrictive language in the extension agreements. The district
    court denied taxpayers’ partial summary judgment motion.
    The court held that “the extension agreements encompass the
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES 11
    adjustments made by the IRS in the FPAA issued to 2000-A.”
    Relying on the “direct connection” between 2000-A and First
    Ship, the court found “the FPAA issued to 2000-A involve[d]
    an adjustment directly attributable to flow-through items of
    First Ship.” The court analogized to Brody v. Comm’r,
    
    55 T.C.M. 808
    (1988), in which the tax court held that
    an extension agreement covering a lower-tiered partnership
    encompassed a notice of deficiency to the partners and the
    upper-tiered partnership.
    After a bench trial, the district court issued an order
    denying taxpayers’ petition for relief. Following the district
    court’s entry of final judgment, taxpayers filed a timely
    notice of appeal.
    We have jurisdiction under 28 U.S.C. § 1291. We
    “review de novo a district court’s grant or denial of a motion
    for partial summary judgment.” Balvage v. Ryderwood
    Improvement and Serv. Ass’n, Inc., 
    642 F.3d 765
    , 775 (9th
    Cir. 2011). “Interpretation of [IRS] waiver agreements is
    subject to the rules governing interpretation of contracts; and
    when, as in this case, the lower court based its decision on the
    language of the agreement and principles of contract
    interpretation, the decision is one of law which we review de
    novo.” Roszkos v. Comm’r, 
    850 F.2d 514
    , 516 (9th Cir.
    1988) (internal citations omitted).
    II
    Before we analyze the legal effect of the FPAA and
    extension agreements in this case, some additional
    background on the structure of partnership taxation law is
    required. Unlike corporations, partnerships are not subject to
    federal income tax. I.R.C. § 701. However, partnerships do
    12 MARTIN 1999 IRREVOCABLE TRUST V. UNITED STATES
    file informational tax returns, 
    id. § 6031,
    which inform the
    partners of their distributive share of partnership gains,
    losses, deductions, or credits. See 
    id. §§ 701,
    702. To avoid
    the redundancy of assessing the effect of a partnership on a
    partner’s tax returns at the individual partner level, Congress
    enacted TEFRA, “which created a single unified procedure
    for determining the tax treatment of all partnership items at
    the partnership level.” Randell v. United States, 
    64 F.3d 101
    ,
    103 (2d Cir. 1995); see also United States v. Woods,
    
    134 S. Ct. 557
    , 562–63 (2013). Partnership items, such as a
    partnership’s income, gain, loss, deductions, or credits,
    26 C.F.R. § 301.6231(a)(3)–1(a)(1)(i), are items that must be
    taken into account on a partner’s federal income tax return
    and that are determined by the Treasury Secretary to be
    “more appropriately determined at the partnership level than
    at the partner level.” I.R.C. § 6231(a)(3).
    Under TEFRA, when the IRS initiates adjustment
    “proceedings at the partnership level,” it must notify certain
    partners. 
    Woods, 134 S. Ct. at 563
    . The IRS sends notice of
    an adjustment in the form of an FPAA. 
    Id. A partnership
    can
    challenge an FPAA under I.R.C. § 6226. 
    Id. After an
    FPAA
    becomes final, “the IRS may assess partners with their
    distributive share of the adjusted partnership items.” 
    Randell, 64 F.3d at 104
    .
    Generally, the IRS must assess federal income tax within
    three years of a taxpayer filing his return. I.R.C. § 6501(a).
    For assessments related to partnerships, TEFRA has
    established a separate provision for extending the Section
    6501 statute of limitations for assessments attributable to
    partnership items. 
    Id. § 6229;
    see also Bakersfield Energy
    Partners, LP v. Comm’r, 
    568 F.3d 767
    , 770 n.5 (9th Cir.
    2009) (noting that Section 6229 “provides a minimum time
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES 13
    period in which the IRS can assess a tax deficiency”). With
    regard to partnerships, Section 6229 states that:
    [T]he period for assessing any tax imposed by
    [the federal income tax subtitle of the Internal
    Revenue Code] with respect to any person
    which is attributable to any partnership item
    (or affected item) for a partnership taxable
    year shall not expire before the date which is
    3 years after the later of–
    (1) the date on which the partnership
    return for such taxable year was filed, or
    (2) the last day for filing such return for
    such year (determined without regard to
    extensions).
    I.R.C. § 6229(a). The provision allows for an extension of
    this three-year period, however, in two instances relevant to
    this case:
    (1) if an FPAA is filed before the expiration
    of either the limitations period itself or an
    extension of the limitations period. 
    Id. § 6229(d).
    (2) if the IRS negotiates an agreement to
    extend the period with any or multiple
    ultimate partners or, with respect to all
    partners, with the tax matters partner. 
    Id. § 6229(b)(1).
    14 MARTIN 1999 IRREVOCABLE TRUST V. UNITED STATES
    An extension agreement may include restrictive language or
    a “restricted consent” to limit its scope. See I.R.M.
    25.6.22.8.1 (Jan. 1, 2000).
    Extension agreements, including those with restricted
    consent language, have long been viewed as “unilateral
    waiver[s]” of the assessments limitations period and not as
    contracts or tolling agreements. Stange v. United States,
    
    282 U.S. 270
    , 276 (1931).         Nevertheless, extension
    agreements are interpreted using contract principles.
    
    Roszkos, 850 F.2d at 516
    .
    The limitations period and extension options in Section
    6229 apply to assessments of tax against the tax-paying
    partner(s). An FPAA, on the other hand, need not be issued
    within a certain limitations period. Meruelo v. Comm’r,
    
    691 F.3d 1108
    , 1117–18 (9th Cir. 2012). However, while the
    FPAA may be issued at any time, it is “subject only to the
    practical limitation that the FPAA may affect only those
    partners whose individual returns remain open under” an
    extension pursuant to I.R.C. Sections 6501 or 6229. 
    Id. (internal quotation
    marks omitted).
    III
    With this factual and legal background in hand, we can
    now set aside the MacGuffins and examine the primary issue
    before us: the scope and effect of the extension agreements.
    We conclude that the extension agreements between the
    Martin Family Trusts and the IRS encompass some of the
    adjustments made to 2000-A by the IRS’s 2000-A FPAA.
    The restrictive language in the extension agreements
    reads, in pertinent part, that “[t]he amount of any deficiency
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES 15
    assessment is to be limited to that resulting from any
    adjustment directly . . . attributable to partnership flow-
    through items of First Ship.” Although the government
    argues the term “adjustment” in these agreements refers to
    adjustments to the taxes of the Martin Family Trusts, we
    conclude that under the TEFRA regime, the term
    “adjustment” in agreements such as these refers to
    partnership-level adjustments conducted through an FPAA.
    Cf. 
    Randell, 64 F.3d at 104
    . The term “deficiency
    assessment” refers to changes to a partner’s tax liability. See,
    e.g., I.R.C. § 6225. The term “partnership flow-through
    items,” then, logically means partnership items that flow
    through to the partnership’s ultimate partners. The most
    obvious partnership flow-through items are items of income
    or loss because those items ultimately flow through
    successive partnership tiers and are reported on the tax
    returns of the partnership’s partners. See, e.g., Tigers Eye
    Trading, LLC v. Comm’r, 
    138 T.C. 67
    , 88 (2012) (“A
    partnership[’s] . . . items of income and loss flow through to
    its partners.”). In contrast, for example, a partnership’s
    distributions or contributions are partnership items, 26 C.F.R.
    § 301.6231(a)(3)–1(a)(4), that do not flow through to the
    partners.
    The term “attributable to” is used throughout the Internal
    Revenue Code but is not defined in statute and “has no
    special technical meaning under the tax laws.” Electrolux
    Holdings, Inc. v. United States, 
    491 F.3d 1327
    , 1330 (Fed.
    Cir. 2007). Both the court in Electrolux and the United States
    Court of Federal Claims have defined “attributable to,” as it
    appears in statute, to mean “‘due to, caused by, or generated
    by.’” Russian Recovery Fund Ltd. v. United States, 101 Fed.
    Cl. 498, 507–09 (2011) (quoting Electrolux Holdings, 
    Inc., 491 F.3d at 1331
    ) (interpreting “attributable to” as it is used
    16 MARTIN 1999 IRREVOCABLE TRUST V. UNITED STATES
    in I.R.C. § 6229 and rejecting the argument that this
    straightforward definition of “attributable to” “runs afoul of
    the Federal Circuit’s admonition against a ‘but for’ test”).
    Here, because the extension agreements are governed by
    Section 6229, we interpret the term “attributable to” as used
    in these extension agreements to mean “due to, caused by, or
    generated by.” See 
    id. Therefore, the
    question in this appeal is whether at least
    some of the adjustments made in the 2000-A FPAA are
    directly due to, caused by, or generated by partnership items
    of First Ship that flow through (e.g., that are items of income
    or loss) to First Ship’s partners, the Martin Family Trusts. If
    so, the extension agreements encompass at least part of the
    2000-A FPAA and, when combined with the subsequent
    extension of time triggered by the issuance of the FPAA
    itself, allow for the IRS to assess new tax on the Martin
    Family Trusts today.
    Reduced to this simple question, the language of the
    agreements leads us to affirm the district court in part. Some
    of the partnership items of First Ship that flow through to the
    Martin Family Trusts triggered some of the adjustments in the
    2000-A FPAA. Specifically, in its 2000 tax return, First Ship
    claimed $318,018,377 in losses due to the liquidation of
    2000-A. This loss is not merely First Ship’s share of the
    losses claimed by 2000-A. Those losses, rather minor, only
    add up to $4,067,455. Instead, this $318 million loss
    originated with First Ship, due to its artificially high basis in
    2000-A. This loss was a partnership flow-through item of
    First Ship that led to the adjustment to 2000-A. Indeed,
    without this large loss, which was the main target of the IRS
    audit and investigation, there would have been no 2000-A
    FPAA.
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES 17
    Following its investigation, the IRS could have issued an
    FPAA to First Ship, disallowing the loss, or it could have
    issued an FPAA to 2000-A, barring any recognition of that
    entity and declaring that the short options constituted
    liabilities. Here, the IRS chose the latter and that action was
    not outside the strictures of the extension agreements.
    Contrary to taxpayers’ arguments, the agreements are not so
    restrictive as to hold that an adjustment that is directly
    attributable to a partnership flow-through item of First Ship
    will not be allowed if it is technically an adjustment to a
    partnership item of a lower-tier, but related, partnership. This
    is especially true given that the limitations period established
    in Sections 6229 and 6501 applies to assessments of tax, not
    adjustments. 
    Meruelo, 691 F.3d at 1117
    –18. Here, the
    operative restraint on assessments, and therefore, practically,
    on the adjustments, is the extension agreements. And
    because some of the adjustments in the FPAA (i.e., those
    portions of the FPAA that had the effect of voiding the $318
    million loss) were directly attributable to the $318 million
    loss claimed by First Ship, a First Ship partnership flow-
    through item, the extension agreements encompass those
    adjustments.4
    Taxpayers dispute this conclusion, relying heavily on
    Russian Recovery Fund. In that case, the Court of Federal
    Claims held that an agreement that specifically cites an
    upper-tier partnership does not encompass adjustments made
    to the lower-tiered partnership. Russian Recovery Fund 
    Ltd., 101 Fed. Cl. at 509
    –10. But Russian Recovery Fund is
    distinguishable from our case. Unlike Russian Recovery
    4
    By operation of I.R.C. § 6229(d), the issuance of the FPAA suspended
    any open period for tax assessment, but only as to tax attributable to any
    partnership item of 2000-A as to its 2000 tax year.
    18 MARTIN 1999 IRREVOCABLE TRUST V. UNITED STATES
    Fund, where the upper-tier partnership simply reported and
    passed along its share of the lower-tiered partnerships’s
    losses, 
    id. at 510,
    here the upper-tiered partnership, First Ship,
    was largely reporting its own loss. This loss generated both
    the massive loss claimed by the Martin Family Trusts and the
    adjustments made by the IRS to 2000-A, bringing it within
    the confines of the extension agreements. Indeed, this loss
    did not and could not have originated with 2000-A, since it
    was only the dissolution of 2000-A that gave rise to the loss.
    
    Id. Thus, unlike
    in the partnership structure in Russian
    Recovery Fund, the IRS’s adjustments eliminating the $318
    million First Ship loss, regardless of whether they were made
    through an adjustment to First Ship or 2000-A, were caused
    by the $318 million loss that originated with First Ship.5
    IV
    We conclude that the extension agreements encompass
    the adjustments made in the 2000-A FPAA that are directly
    attributable to partnership flow-through items of First Ship.
    Thus, as both parties agree, they do not encompass
    adjustments to items of 2000-A which only flow up through
    the minority partners and as a result have no connection to
    First Ship. Nor do they apply to any adjustments made in the
    2000-A FPAA to partnership items of 2000-A of which First
    5
    Taxpayers also argue that the district court misinterpreted and
    misapplied Brody. However, the court’s reliance on Brody is not essential
    to its decision, or our decision, in this case. While taxpayers are correct
    that Brody was decided before TEFRA and is different than this case, the
    district court acknowledged these distinctions and simply used Brody to
    underscore the significance of the relationship between partnerships in a
    multi-tiered partnership structure (e.g., the fact that liabilities claimed by
    2000-A ultimately reach the Martin Family Trusts by first passing through
    First Ship).
    MARTIN 1999 IRREVOCABLE TRUST V. U NITED STATES 19
    Ship merely claimed a share (e.g., the $4,067,455 share First
    Ship claimed of 2000-A’s reported losses). Those losses
    originated with 2000-A and, therefore, adjustments to 2000-A
    that affect those losses are not directly attributable to
    partnership flow-through items of First Ship. To the extent
    that the district court concluded otherwise, it erred.
    V
    In sum, we affirm in part and reverse in part. We agree
    with the district court that the extension agreements between
    the IRS and First Ship encompass adjustments made in the
    2000-A FPAA that are directly attributable to partnership
    flow-through items of First Ship. These are adjustments to
    2000-A that stem from partnership flow-through items of
    First Ship that originate with First Ship (i.e., adjustments that
    eliminate the $318 million loss claimed by First Ship due to
    its inflated basis in 2000-A). We also hold that the FPAA to
    2000-A extended the limitations period for assessing tax
    beyond the extension agreements and through the present
    litigation. However, the agreements do not extend to
    adjustments in the 2000-A FPAA that are not directly
    attributable to First Ship. Because the district court held
    more broadly that “the extension agreements encompass the
    adjustments made by the IRS in the FPAA issued to 2000-A,”
    we remand to the district court to make a determination of
    which adjustments in the 2000-A FPAA are directly
    attributable to partnership flow-through items of First Ship,
    consistent with this opinion.
    Each party shall bear its own costs on appeal.
    AFFIRMED IN PART, REVERSED IN PART