Cornell Research Foundation, Inc. v. Vidal ( 2022 )


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  • Case: 20-2334   Document: 67     Page: 1   Filed: 05/24/2022
    NOTE: This disposition is nonprecedential.
    United States Court of Appeals
    for the Federal Circuit
    ______________________
    CORNELL RESEARCH FOUNDATION, INC.,
    Appellant
    v.
    KATHERINE K. VIDAL, UNDER SECRETARY OF
    COMMERCE FOR INTELLECTUAL PROPERTY
    AND DIRECTOR OF THE UNITED STATES
    PATENT AND TRADEMARK OFFICE,
    Intervenor
    ______________________
    2020-2334, 2020-2335, 2020-2337, 2020-2338, 2020-2339,
    2020-2340
    ______________________
    Appeals from the United States Patent and Trademark
    Office, Patent Trial and Appeal Board in Nos. IPR2019-
    00577, IPR2019-00578, IPR2019-00579, IPR2019-00580,
    IPR2019-00581, IPR2019-00582.
    ______________________
    Decided: May 24, 2022
    ______________________
    JULIE S. GOLDEMBERG, Morgan, Lewis & Bockius LLP,
    Philadelphia, PA, argued for appellant. Also represented
    by ROBERT CHRISTIAN BERTIN, ROBERT JOHN SMYTH, Wash-
    ington, DC; AJIT VAIDYA, Kenealy Vaidya LLP, Washing-
    ton, DC.
    Case: 20-2334    Document: 67      Page: 2    Filed: 05/24/2022
    2              CORNELL RESEARCH FOUNDATION, INC.     v. VIDAL
    MAUREEN DONOVAN QUELER, Office of the Solicitor,
    United States Patent and Trademark Office, Alexandria,
    VA, argued for intervenor. Also represented by MICHAEL
    S. FORMAN, THOMAS W. KRAUSE, AMY J. NELSON, FARHEENA
    YASMEEN RASHEED.
    ______________________
    Before PROST, REYNA, and TARANTO, Circuit Judges.
    PROST, Circuit Judge.
    Cornell Research Foundation, Inc. (“Cornell”) appeals
    from six inter partes reviews (“IPR”), each regarding a dif-
    ferent Cornell patent, in which the Patent Trial and Appeal
    Board (“Board”) concluded that the challenged claims were
    unpatentable as anticipated or obvious. E.g., Associated
    British Foods PLC v. Cornell Rsch. Found., Inc.,
    No. IPR2019-00577, Paper 117 (P.T.A.B. July 23, 2020)
    (“Final Written Decision”). Because substantial evidence
    supports the Board’s determinations that the claims were
    obvious, we affirm.
    BACKGROUND
    I
    The patents at issue relate to phytases in livestock
    feed. Phytases are enzymes that help certain animals ab-
    sorb phosphate, an important nutrient. Skilled artisans
    can produce phytase enzymes by taking a phytase gene
    from one organism and incorporating it into a host; the host
    then replicates and expresses the phytase protein, which
    can then be added to the feed.
    
    U.S. Patent No. 8,993,300
     (“the ’300 patent”), repre-
    sentative in this appeal, describes a heterologous method
    of producing phytase: it uses a phytase gene derived from
    Escherichia coli, a species of bacteria, and a fungal host.
    There are different strains of E. coli, and different strains
    express different phytases. Two are relevant here: E. coli
    Case: 20-2334    Document: 67      Page: 3       Filed: 05/24/2022
    CORNELL RESEARCH FOUNDATION, INC.    v. VIDAL                 3
    appA phytase and E. coli B phytase. There are also a vari-
    ety of fungal species. As is relevant here, the fungal king-
    dom includes yeast, of which Saccharomyces cerevisiae and
    Pichia pastoris are species.
    Independent claim 1 and dependent claims 10–12 of
    the ’300 patent are representative for the purposes of this
    consolidated appeal. They recite:
    1. A method of producing a phytase in fungal cells,
    the method comprising:
    providing a polynucleotide encoding an Escherichia
    coli phytase;
    expressing the polynucleotide in the fungal cells;
    and
    isolating the expressed Escherichia coli phytase
    wherein the Escherichia coli phytase catalyzes the
    release of phosphate from phytate.
    10. The method of claim 1 wherein the Escherichia
    coli phytase has an optimum activity at a temper-
    ature range of 57 degrees C. to 65 degrees C.
    11. The method of claim 1 wherein the Escherichia
    coli phytase retains at least 40% of its activity after
    heating the phytase for 15 minutes at 80 degrees
    C.
    12. The method of claim 1 wherein the Escherichia
    coli phytase retains at least 60% of its activity after
    heating the phytase for 15 minutes at 60 degrees
    C.
    Dependent claims 10–12 add so-called “thermostability
    limitations” to the phytases produced by the heterologous
    method described in independent claim 1.
    Case: 20-2334    Document: 67      Page: 4   Filed: 05/24/2022
    4              CORNELL RESEARCH FOUNDATION, INC.    v. VIDAL
    II
    We recount only the relevant procedural history below.
    Associated British Foods PLC (“ABF”) filed six IPR peti-
    tions, each challenging a different Cornell patent. The
    Board instituted review for all six and found all challenged
    claims unpatentable.
    ABF asserted two varieties of prior-art combinations in
    its petitions—those involving Kretz 1 and those not involv-
    ing Kretz. The Kretz-based challenges apply only to
    the ’300 patent. But the parties agree that all six Board
    decisions “stand and fall” with the Board’s non-Kretz obvi-
    ousness analysis for the ’300 patent. Reply Br. 26–27. We
    accordingly focus our discussion on the Board’s Final Writ-
    ten Decision for the ’300 patent.
    Beginning with the non-Kretz grounds, ABF asserted
    that all challenged claims of the ’300 patent would have
    been obvious over two combinations: (1) Dassa, 2 Greiner, 3
    and Cheng 4 and (2) Dassa, Greiner, Romanos, 5 and
    Van Gorcom 6      (collectively,   “the    Dassa/Greiner
    1   
    U.S. Patent No. 5,876,997
     (“Kretz”).
    2   Janie Dassa, Christian Marck, & Paul L. Boquet,
    The Complete Nucleotide Sequence of the Escherichia coli
    Gene appA Reveals Significant Homology Between pH 2.5
    Acid      Phosphatase      and     Glucose-1-Phosphatase,
    172 J. BACTERIOLOGY 5497 (1990) (“Dassa”).
    3   R. Greiner, U. Konietzny, & Kl.-D. Jany, Purifica-
    tion and Characterization of Two Phytases from Esche-
    richia coli, 303 ARCHIVES BIOCHEMISTRY & BIOPHYSICS 107
    (1993) (“Greiner”).
    4   
    U.S. Patent No. 5,985,605
     (“Cheng”).
    5   Michael A. Romanos, Carol A. Scorer, & Jeffrey J.
    Clare, Foreign Gene Expression in Yeast: A Review, 8 YEAST
    423 (1992) (“Romanos”).
    6   
    U.S. Patent No. 5,436,156
     (“Van Gorcom”).
    Case: 20-2334     Document: 67      Page: 5       Filed: 05/24/2022
    CORNELL RESEARCH FOUNDATION, INC.     v. VIDAL                 5
    combinations”). ABF argued that the thermostability
    claims of the ’300 patent would have been obvious for two
    independent reasons: (1) they were inherent properties of
    the Dassa/Greiner combinations, and (2) they were dis-
    closed by Olsen. 7 In its Final Written Decision, the Board
    concluded that there was a motivation to combine and rea-
    sonable expectation of success for the Dassa/Greiner com-
    binations and that the thermostability dependent claims of
    the ’300 patent were obvious due to inherency. See Final
    Written Decision, at 127–31, 141, 172–73.
    For the Kretz-based invalidity arguments, ABF as-
    serted that Kretz (1) anticipated certain challenged claims
    of the ’300 patent as § 102(e) prior art 8 and (2) rendered all
    challenged claims obvious in combination with other refer-
    ences. See id. at 10–11. The Board determined that Cor-
    nell failed to antedate Kretz, id. at 34, and that Kretz
    anticipated certain claims and rendered obvious the rest in
    light of those other references, see id. at 172–73.
    Cornell appeals from all six final written decisions in
    this consolidated appeal. The Patent and Trademark Of-
    fice Director intervened to defend the Board’s decisions af-
    ter ABF filed a notice of non-participation. We have
    jurisdiction under 
    28 U.S.C. § 1295
    (a)(4)(A).
    DISCUSSION
    Cornell asserts primarily that three Board conclusions
    lack substantial evidence: (1) that there was a motivation
    to combine and reasonable expectation of success for the
    Dassa/Greiner combinations; (2) that the thermostability
    properties of the phytases produced by the claimed heter-
    ologous method are inherent; and (3) that Cornell failed to
    7   Ole Olsen & Karl Kristian Thomsen, Improvement
    of Bacterial β-Glucanase Thermostability by Glycosylation,
    137 J. GEN. MICROBIOLOGY 579 (1991) (“Olsen”).
    8   
    35 U.S.C. § 102
    (e) (2010).
    Case: 20-2334    Document: 67      Page: 6    Filed: 05/24/2022
    6              CORNELL RESEARCH FOUNDATION, INC.     v. VIDAL
    antedate Kretz. We affirm the Board on the first two issues
    and accordingly do not reach the third.
    I
    Putting aside the thermostability limitations of the
    ’300 patent’s dependent claims (discussed below), Cornell
    does not dispute that the Dassa/Greiner combinations dis-
    close all limitations of the relevant claims. Cornell dis-
    putes only the Board’s findings of motivation to combine
    and reasonable expectation of success for an E. coli phytase
    with a fungal host. Those are both fact questions that we
    review for substantial evidence, which is “such relevant ev-
    idence as a reasonable mind might accept as adequate to
    support a conclusion.” In re Mouttet, 
    686 F.3d 1322
    , 1331
    (Fed. Cir. 2012); PAR Pharm., Inc. v. TWI Pharms., Inc.,
    
    773 F.3d 1186
    , 1196 (Fed. Cir. 2014).
    In finding a motivation to combine, the Board credited
    ABF’s expert testimony that P. pastoris yeast was known
    to “produce high yields of heterologous protein [e.g., bacte-
    rial protein] and, thus, reduce industrial costs—an im-
    portant factor in producing phytases for livestock feed” on
    an industrial level. Final Written Decision, at 128. The
    Board found this to be “persuasive evidence setting forth
    reasons why [a] skilled artisan would have been motivated
    to express an E. coli appA [enzyme] in a fungal cell.” 
    Id.
    This constitutes substantial evidence for a motivation to
    combine. KSR Int’l Co. v. Teleflex Inc., 
    550 U.S. 398
    , 420
    (2007) (“[A]ny need or problem known in the field of en-
    deavor at the time of invention and addressed by the patent
    can provide a reason for combining the elements in the
    manner claimed.”).
    Cornell’s two main arguments to the contrary are un-
    persuasive. First, Cornell asserts that the Board’s motiva-
    tion-to-combine conclusion is contrary to ABF’s expert
    Case: 20-2334    Document: 67      Page: 7       Filed: 05/24/2022
    CORNELL RESEARCH FOUNDATION, INC.    v. VIDAL                 7
    testimony that the Wodzinski reference 9 taught away from
    using a bacterial phytase in animal feed. We note that
    Wodzinski is not a part of the Dassa/Greiner combinations;
    additionally, the Board did not make any determination as
    to whether Wodzinski does or does not teach away. Final
    Written Decision, at 84. And even if the Board concluded
    that Wodzinski’s suggestions about bacterial phytases in
    animal feed, generally, were outweighed by the rest of the
    record evidence about producing E. coli appA phytase via a
    fungal host for use in animal feed, specifically, we would
    see no error. See In re Young, 
    927 F.2d 588
    , 591 (Fed. Cir.
    1991).
    Second, Cornell contends that the art suggested that
    pairing a bacterial phytase with a bacterial host was more
    advantageous than pairing such a phytase with a fungal
    host. Even if that’s true, as the Board correctly noted, “the
    law ‘does not require that the motivation be the best option,
    only that it be a suitable option.’” Final Written Decision,
    at 81–82 (emphasis omitted in original) (quoting PAR
    Pharm., 773 F.3d at 1197–98).
    Cornell’s challenge to the substantial evidence of the
    Board’s reasonable-expectation-of-success finding is simi-
    larly flawed. Cornell asserts a skilled artisan would have
    “had no reason to expect ‘that expressing the E. coli
    phytase in a fungal host would have produced an active en-
    zyme’” due to increased glycosylation, as its expert testi-
    fied. Appellant’s Br. 33 (quoting J.A. 4084–89). Cornell’s
    expert provided two examples of unsuccessful heterologous
    systems “where one of ordinary skill . . . may have at-
    tributed the lack of enzyme activity to glycosylation.” Fi-
    nal Written Decision, at 90. But the Board was free to
    weigh ABF’s expert testimony more heavily, and that’s
    what it did. The Board credited ABF’s expert testimony
    providing “nine or ten” contrary examples of systems that
    9   See J.A. 22462–63; see also J.A. 15187–89.
    Case: 20-2334     Document: 67      Page: 8   Filed: 05/24/2022
    8               CORNELL RESEARCH FOUNDATION, INC.     v. VIDAL
    produced active bacterial enzymes in yeast hosts. Id.
    at 90–91. In addition, the Board pointed to Cornell’s expert
    testimony that, “in the majority of cases[,] glycosylation did
    not have an effect on the activity of the enzyme.” Id.
    at 91–92.
    We accordingly affirm the Board’s determination that
    there was a motivation to combine and reasonable expecta-
    tion of success for the Dassa/Greiner combinations. 10
    II
    Cornell also challenges the Board’s finding that the
    thermostability limitations in the ’300 patent’s dependent
    claims are inherent results of the Dassa/Greiner combina-
    tions. Whether prior art inherently discloses a claim limi-
    tation is a question of fact that we review for substantial
    evidence. PAR Pharm., 773 F.3d at 1194.
    The Board found the thermostability limitations inher-
    ent to a heterologous system expressing the Dassa/Greiner
    E. coli appA phytase in a fungal host disclosed by Cheng,
    Romanos, or Van Gorcom, including P. pastoris and S. cere-
    visiae. The Board cited Cornell’s expert testimony, ABF’s
    expert testimony, the ’300 patent, and prosecution history
    as support. Final Written Decision, at 78–79. Indeed, the
    Board credited Cornell’s expert, who confirmed that “ex-
    press[ing] the same enzyme in the same host under the
    same conditions” produces “inherent results,” like thermo-
    stability characteristics. J.A. 7694–95 (emphasis added);
    Final Written Decision, at 78 (citing J.A. 7695). This con-
    stitutes substantial evidence supporting the Board’s deter-
    mination.
    10  We are not persuaded by Cornell’s contention that
    the Board’s analysis of the non-Kretz combinations is in-
    fected by analysis of Kretz.
    Case: 20-2334     Document: 67     Page: 9       Filed: 05/24/2022
    CORNELL RESEARCH FOUNDATION, INC.    v. VIDAL                 9
    Cornell’s two arguments to the contrary are not per-
    suasive. First, Cornell faults the Board for citing no data
    outside of the ’300 patent to support its inherency finding.
    But the Board permissibly cited the ’300 patent’s disclo-
    sure that an E. coli appA phytase expressed in a P. pastoris
    host has optimum activity at 60 degrees Celsius as well as
    the patent’s teaching that an E. coli appA phytase ex-
    pressed in a S. cerevisiae host retained 69 percent of its ac-
    tivity after heating it for 15 minutes at 80 degrees Celsius.
    Final Written Decision, at 78–79; see Hospira, Inc. v. Frese-
    nius Kabi USA, LLC, 
    946 F.3d 1322
    , 1329–30 (Fed. Cir.
    2020). That data is consistent with the thermostability
    limitations of claims 10–12. Although it may be possible
    that the conditions of the Dassa/Greiner combinations
    were not the same as those described in the ’300 patent,
    Cornell did not make that argument and offered no evi-
    dence to that effect. Oral Arg. at 26:27–27:10, No. 20-2334,
    https://oralarguments.cafc.uscourts.gov/default.aspx?fl=20
    -2334_05032022.mp3.
    Second, Cornell asserts that the Board’s inherency
    finding for the Dassa/Greiner combinations is at odds with
    its finding of no inherency with respect to Kretz as antici-
    patory art. Cornell argues that this is especially concern-
    ing because the standard for inherency under § 103 is
    higher than that under § 102. In this case, we find no error.
    The Board explained that it did not find the thermostabil-
    ity limitations inherent under Kretz because ABF was re-
    lying on Kretz’s teachings using the E. coli B phytase
    whereas the thermostability data from the ’300 patent re-
    sulted from using the E. coli appA phytase. Final Written
    Decision, at 58. This is consistent with the Board’s reliance
    on Cornell’s expert testimony that the same enzyme is
    needed for the thermostability characteristics of an enzyme
    produced by a particular enzyme-host combination to be in-
    herent.
    We thus also affirm the Board’s inherency finding as
    supported by substantial evidence. Since that resolves this
    Case: 20-2334    Document: 67     Page: 10    Filed: 05/24/2022
    10             CORNELL RESEARCH FOUNDATION, INC.     v. VIDAL
    appeal as to all patents and all claims, we do not reach Cor-
    nell’s other arguments, including those about antedating
    Kretz.
    CONCLUSION
    We have considered the parties’ remaining arguments
    but find them unpersuasive. For the foregoing reasons, we
    affirm the Board’s obviousness conclusions.
    AFFIRMED
    COSTS
    Costs to Intervenor.
    

Document Info

Docket Number: 20-2334

Filed Date: 5/24/2022

Precedential Status: Non-Precedential

Modified Date: 6/3/2022